Leonardo A. Pachon, Paul Brumer
Under natural conditions, excitation of biological molecules, which display non-unitary open system dynamics, occurs via incoherent processes such as temperature changes or irradiation by sunlight/moonlight. The dynamics of such processes is explored analytically in a non-Markovian generic model. Specifically, a system S in equilibrium with a thermal bath TB is subjected to an external incoherent perturbation BB (such as sunlight) or another thermal bath TB', which induces time evolution in (S+TB). Particular focus is on (i) the extent to which the resultant dynamics is coherent, and (ii) the role of "stationary coherences", established in the (S+TB) equilibration, in the response to the second incoherent perturbation. Results for systems with parameters analogous to those in light harvesting molecules in photosynthesis show that the resultant dynamical behaviour is incoherent beyond a very short response to the turn-on of the perturbation.
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http://arxiv.org/abs/1210.6374
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